HL_5KCS_011

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

5KCS|1|1A|G|386, 5KCS|1|1A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_011 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.263

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KCS|1|1A|G|381
5KCS|1|1A|A|382
5KCS|1|1A|C|383
5KCS|1|1A|A|384
5KCS|1|1A|C|385
5KCS|1|1A|G|386
5KCS|1|1A|U|387
5KCS|1|1A|G|388
5KCS|1|1A|G|389
5KCS|1|1A|U|390
5KCS|1|1A|A|391
5KCS|1|1A|U|392
5KCS|1|1A|C|393

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28