HL_5KCS_047

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5KCS|1|1A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1348

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5KCS|1|1A|G|1949
5KCS|1|1A|G|1950
5KCS|1|1A|U|1951
5KCS|1|1A|A|1952
5KCS|1|1A|A|1953
5KCS|1|1A|G|1954
5KCS|1|1A|U|1955
5KCS|1|1A|U|1956
5KCS|1|1A|C|1957

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14

Chain 1a

Small subunit ribosomal RNA; SSU rRNA