HL_5KCS_052

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5KCS|1|1A|A|2268, 5KCS|1|1A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1307

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5KCS|1|1A|C|2264
5KCS|1|1A|U|2265
5KCS|1|1A|A|2266
5KCS|1|1A|A|2267
5KCS|1|1A|A|2268
5KCS|1|1A|G|2269
5KCS|1|1A|A|2270
5KCS|1|1A|G|2271
5KCS|1|1A|U|2272
5KCS|1|1A|A|2273
5KCS|1|1A|A|2274
5KCS|1|1A|C|2275
5KCS|1|1A|G|2276

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16