HL_5KCS_064

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5KCS|1|1A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1139

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|C|2745
5KCS|1|1A|U|2746
5KCS|1|1A|G|2747
5KCS|1|1A|A|2748
5KCS|1|1A|A|2749
5KCS|1|1A|A|2750
5KCS|1|1A|G|2751
5KCS|1|1A|C|2752
5KCS|1|1A|A|2753
5KCS|1|1A|U|2754
5KCS|1|1A|C|2755
5KCS|1|1A|U|2756
5KCS|1|1A|A|2757
5KCS|1|1A|A|2758
5KCS|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13