HL_5KCS_090
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5KCS|1|1a|A|968, 5KCS|1|1a|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KCS_090 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.3273
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5KCS|1|1a|G|963
5KCS|1|1a|A|964
5KCS|1|1a|U|965
5KCS|1|1a|2MG|966
5KCS|1|1a|5MC|967
5KCS|1|1a|A|968
5KCS|1|1a|A|969
5KCS|1|1a|C|970
5KCS|1|1a|G|971
5KCS|1|1a|C|972
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14
- Chain 1w
- Tetracycline resistance protein TetM from transposon Tn916
- Chain 1x
- Transfer RNA; tRNA
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