HL_5KCS_101

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

5KCS|1|1x|G|18, 5KCS|1|1x|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_101 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.14

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5KCS|1|1x|C|13
5KCS|1|1x|A|14
5KCS|1|1x|G|15
5KCS|1|1x|G|18
5KCS|1|1x|G|19
5KCS|1|1x|A|21
5KCS|1|1x|G|22

Current chains

Chain 1x

P-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5