HL_5KCS_102

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72253.1

Basepair signature

cWW-bif-R-R-R-R-R

Number of instances in this motif group

42

Unit IDs

5KCS|1|1x|C|31
5KCS|1|1x|C|32
5KCS|1|1x|U|33
5KCS|1|1x|G|34
5KCS|1|1x|A|35
5KCS|1|1x|U|36
5KCS|1|1x|A|37
5KCS|1|1x|A|38
5KCS|1|1x|G|39

Current chains

Chain 1x

P-site tRNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1i

30S ribosomal protein S9

Chain 1v

mRNA