Motif HL_72253.1 Version HL_72253.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4DR7_033 | 4DR7 | 0.5300 | 0 | W | RNA (11-mer) | C | 31 | C | 32 | U | 33 | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | G | 39 | ncWW | |||
| 2 | HL_4W29_037 | 4W29 | 0.4462 | 0 | tRNA anticodon loop (H) | AX | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | tSHa | |
| 3 | HL_3TUP_002 | 3TUP | 0.3526 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 4 | HL_4YCO_002 | 4YCO | 0.3047 | 0 | tRNA anticodon loop | D | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 5 | HL_1U0B_002 | 1U0B | 0.3412 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 6 | HL_3J9M_062 | 3J9M | 0.2939 | 0 | B | tRNA | A | 1630 | C | 1631 | U | 1632 | U | 1633 | A | 1634 | C | 1635 | A | 1636 | C | 1637 | U | 1638 | cWW | ncWB | ntSHa | |
| 7 | HL_3WFS_002 | 3WFS | 0.3875 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | ncWW | ncWW | |
| 8 | HL_3J7P_084 | 3J7P | 0.6503 | 0 | S2 | SSU rRNA | A | 415 | U | 416 | C | 417 | A | 418 | G | 419 | G | 420 | G | 421 | U | 422 | U | 423 | cWW | ncwW | ||
| 9 | HL_1J2B_001 | 1J2B | 0.5197 | 0 | C | tRNA | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | ||
| 10 | HL_3W3S_006 | 3W3S | 0.4082 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31||||43_455 | C | 32||||43_455 | U | 33||||43_455 | U | 34||||43_455 | C | 35||||43_455 | A | 36||||43_455 | A | 37||||43_455 | A | 38||||43_455 | U | 39||||43_455 | cWW | ncWW | |
| 11 | HL_3W3S_002 | 3W3S | 0.4082 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 12 | HL_2CV1_005 | 2CV1 | 0.3727 | 0 | D | tRNA | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW | ||
| 13 | HL_2AKE_002 | 2AKE | 0.4268 | 0 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | ||
| 14 | HL_2AKE_005 | 2AKE | 0.4268 | 0 | tRNA anticodon loop | B | tRNA | A | 31||||7_556 | C | 32||||7_556 | U | 33||||7_556 | C | 34||||7_556 | C | 35||||7_556 | A | 36||||7_556 | G | 37||||7_556 | A | 38||||7_556 | U | 39||||7_556 | cWW | ||
| 15 | HL_4V9L_034 | 4V9L | 0.3622 | 0 | tRNA anticodon loop (H) | AW | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |
| 16 | HL_3J92_002 | 3J92 | 0.1929 | 0 | tRNA anticodon loop (H) | 2 | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 17 | HL_4V9Q_214 | 4V9Q | 0.1332 | 0 | tRNA anticodon loop | DV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 18 | HL_4TUE_034 | 4TUE | 0.0904 | 0 | tRNA anticodon loop | QV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 19 | HL_4V9B_034 | 4V9B | 0.0000 | 0 | tRNA anticodon loop (H) | AC | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 20 | HL_4V50_137 | 4V50 | 0.1362 | 0 | tRNA anticodon loop | CW | PHE TRNA (UNMODIFIED BASES) | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | |
| 21 | HL_4WT8_216 | 4WT8 | 0.1445 | 0 | tRNA anticodon loop | D4 | tRNA | G | 32 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
| 22 | HL_5AJ0_118 | 5AJ0 | 0.1902 | 0 | tRNA anticodon loop (H) | Bv | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 23 | HL_4V8U_142 | 4V8U | 0.1713 | 0 | tRNA anticodon loop (H) | CV | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 24 | HL_2AZX_002 | 2AZX | 0.2341 | 0 | C | tRNA | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | G | 537 | A | 538 | U | 539 | cWW | ncWW | ||
| 25 | HL_2AZX_011 | 2AZX | 0.2341 | 0 | C | tRNA | A | 531||||7_555 | C | 532||||7_555 | U | 533||||7_555 | C | 534||||7_555 | C | 535||||7_555 | A | 536||||7_555 | G | 537||||7_555 | A | 538||||7_555 | U | 539||||7_555 | cWW | ncWW | ||
| 26 | HL_4P8Z_001 | 4P8Z | 0.2270 | 0 | A | Lariat capping ribozyme | G | 23 | C | 24 | U | 25 | A | 26 | A | 27 | U | 28 | C | 29 | A | 30 | C | 31 | cWW | ncWW | ||
| 27 | HL_4P9R_002 | 4P9R | 0.2437 | 0 | A | RNA (189-MER) | G | 241 | C | 242 | U | 243 | A | 244 | A | 245 | U | 246 | C | 247 | A | 248 | C | 249 | cWW | ncWW | ||
| 28 | HL_4V4J_002 | 4V4J | 0.3400 | 0 | tRNA anticodon loop (H) | 2 | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 29 | HL_5IMQ_002 | 5IMQ | 0.2780 | 0 | tRNA anticodon loop (H) | 4 | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 30 | HL_4V9I_150 | 4V9I | 0.2550 | 0 | tRNA anticodon loop (H) | CY | A-SITE tRNA | U | 31 | C | 32 | U | 33 | C | 34 | G | 35 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ||
| 31 | HL_5IBB_210 | 5IBB | 0.2292 | 0 | tRNA anticodon loop | 1L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ncWW | |
| 32 | HL_4V8C_180 | 4V8C | 0.2748 | 0 | CB | tRNA | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | cWW | |||
| 33 | HL_5KCS_102 | 5KCS | 0.2143 | 0 | tRNA anticodon loop (H) | 1x | tRNA | C | 31 | C | 32 | U | 33 | G | 34 | A | 35 | U | 36 | A | 37 | A | 38 | G | 39 | cWW | ncWW | |
| 34 | HL_3J9W_034 | 3J9W | 0.2408 | 0 | AX | tRNA | C | 31 | C | 32 | U | 33 | G | 34 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ncWB | ||
| 35 | HL_3JAH_002 | 3JAH | 0.1983 | 0 | tRNA anticodon loop (H) | 2 | tRNA | C | 31 | C | 32 | U | 33 | A | 34 | A | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ncWB | ntSHa |
| 36 | HL_3JBV_037 | 3JBV | 0.3479 | 0 | tRNA anticodon loop (H) | W | tRNA | C | 31 | A | 32 | U | 33 | G | 34 | C | 35 | C | 36 | G | 37 | U | 38 | G | 39 | ncWW | ntSH | |
| 37 | HL_4UY8_073 | 4UY8 | 0.3712 | 0 | tRNA anticodon loop (H) | V | tRNA | C | 31 | A | 32 | U | 33 | G | 34 | G | 35 | G | 36 | G | 37 | U | 38 | G | 39 | ncWW | ||
| 38 | HL_4P5J_002 | 4P5J | 0.5838 | 0 | Anticodon loop related | A | tRNA-like 3' UTR element | C | 25 | U | 26 | C | 27 | G | 28 | A | 29 | C | 30 | A | 31 | C | 32 | G | 33 | cWW | ||
| 39 | HL_1J1U_002 | 1J1U | 0.6000 | 0 | tRNA anticodon loop | B | tRNA | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW | |
| 40 | HL_1J1U_005 | 1J1U | 0.6000 | 0 | tRNA anticodon loop | B | tRNA | A | 532||||4_556 | C | 533||||4_556 | U | 534||||4_556 | G | 535||||4_556 | U | 536||||4_556 | A | 537||||4_556 | G | 538||||4_556 | A | 539||||4_556 | U | 540||||4_556 | cWW | ncWW | |
| 41 | HL_3RG5_010 | 3RG5 | 0.7557 | 0 | B | Selenocysteine transfer RNA | G | 31||||1_556 | C | 32||||1_556 | U | 33||||1_556 | U | 34||||1_556 | C | 35||||1_556 | A | 36||||1_556 | A | 37||||1_556 | A | 38||||1_556 | C | 39||||1_556 | cWW | cWW | ||
| 42 | HL_3RG5_006 | 3RG5 | 0.7557 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAUAAC | 7 |
| ACUCCAGAU | 4 |
| ACUGAAAAU | 3 |
| AUUGAAAAU | 3 |
| CCUUACAAG | 2 |
| ACUUCAAAU | 2 |
| GCUAAUCAC | 2 |
| ACUGUAGAU | 2 |
| GCUUCAAAC | 2 |
| CCUGGAAAG | 1 |
| AUUGCAAAU | 1 |
| ACUUACACU | 1 |
| AUCAGGGUU | 1 |
| CCUUACGAG | 1 |
| CCUCUCAAG | 1 |
| ACUCAUAAU | 1 |
| UCUCGAAAA | 1 |
| CUUGAGGUG | 1 |
| CCUGAUAAG | 1 |
| CCUGUCACG | 1 |
| CCUAACACG | 1 |
| CAUGCCGUG | 1 |
| CAUGGGGUG | 1 |
| CUCGACACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAUAA | 8 |
| CUUCAAA | 4 |
| CUCCAGA | 4 |
| CUGAAAA | 3 |
| UUGAAAA | 3 |
| CUUACAA | 2 |
| CUAAUCA | 2 |
| CUGUAGA | 2 |
| CUGGAAA | 1 |
| UUGCAAA | 1 |
| CUUACAC | 1 |
| UCAGGGU | 1 |
| CUUACGA | 1 |
| CUCUCAA | 1 |
| CUCGAAA | 1 |
| UUGAGGU | 1 |
| CUGAUAA | 1 |
| CUGUCAC | 1 |
| CUAACAC | 1 |
| AUGCCGU | 1 |
| AUGGGGU | 1 |
| UCGACAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (16)
- tRNA anticodon loop (H) (13)
- (12)
- Anticodon loop related (1)
- Basepair signature
- cWW-bif-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.46 | Max 0.95
Coloring options: