HL_5KPS_005

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5KPS|1|27|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_005 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3746

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

5KPS|1|27|C|206
5KPS|1|27|C|207
5KPS|1|27|U|208
5KPS|1|27|U|209
5KPS|1|27|C|210
5KPS|1|27|G|211
5KPS|1|27|G|212
5KPS|1|27|G|213

Current chains

Chain 27

16S ribosomal RNA

Nearby chains