5KPS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5KPS_001 | 1/27/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_5KPS_111 | 1/27/82:87 | No text annotation | ||
| HL_5KPS_003 | 1/27/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_5KPS_004 | 1/27/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_5KPS_005 | 1/27/206:213 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_5KPS_006 | 1/27/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_5KPS_007 | 1/27/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_5KPS_008 | 1/27/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_5KPS_009 | 1/27/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5KPS_010 | 1/27/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_5KPS_011 | 1/27/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5KPS_012 | 1/27/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_5KPS_013 | 1/27/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_5KPS_014 | 1/27/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_5KPS_015 | 1/27/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_5KPS_016 | 1/27/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_5KPS_017 | 1/27/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_5KPS_018 | 1/27/840:846 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_5KPS_019 | 1/27/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_5KPS_020 | 1/27/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.8 | |
| HL_5KPS_021 | 1/27/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_5KPS_022 | 1/27/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_5KPS_023 | 1/27/1027:1034 | No text annotation | ||
| HL_5KPS_024 | 1/27/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_5KPS_025 | 1/27/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_5KPS_026 | 1/27/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_5KPS_027 | 1/27/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_5KPS_028 | 1/27/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_5KPS_029 | 1/27/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5KPS_030 | 1/27/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5KPS_031 | 1/27/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_5KPS_032 | 1/27/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5KPS_033 | 1/28/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_5KPS_034 | 1/28/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_5KPS_035 | 1/28/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_5KPS_036 | 1/28/137:142 | No text annotation | ||
| HL_5KPS_037 | 1/28/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_5KPS_038 | 1/28/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_5KPS_039 | 1/28/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_5KPS_040 | 1/28/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_5KPS_041 | 1/28/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_5KPS_042 | 1/28/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_5KPS_043 | 1/28/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_5KPS_044 | 1/28/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_5KPS_045 | 1/28/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_5KPS_046 | 1/28/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_5KPS_047 | 1/28/545:548 | Mini UNCG with extended bulge | homologous HL_7A0S_017 HL_48778.2 | |
| HL_5KPS_048 | 1/28/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_5KPS_049 | 1/28/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_5KPS_050 | 1/28/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_5KPS_051 | 1/28/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_5KPS_052 | 1/28/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_5KPS_053 | 1/28/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_5KPS_054 | 1/28/779:785 | GNRA related | geometric HL_2NUE_001 HL_53890.2 | |
| HL_5KPS_055 | 1/28/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_5KPS_056 | 1/28/884:892 | No text annotation | ||
| HL_5KPS_057 | 1/28/954:963 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_5KPS_058 | 1/28/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_5KPS_059 | 1/28/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_5KPS_060 | 1/28/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_5KPS_061 | 1/28/1169:1180 | No text annotation | ||
| HL_5KPS_062 | 1/28/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_5KPS_063 | 1/28/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_5KPS_064 | 1/28/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_5KPS_065 | 1/28/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_5KPS_066 | 1/28/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5KPS_109 | 1/28/1450:1461 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
| HL_5KPS_067 | 1/28/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_5KPS_068 | 1/28/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_5KPS_069 | 1/28/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_5KPS_070 | 1/28/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5KPS_071 | 1/28/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_5KPS_072 | 1/28/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_5KPS_073 | 1/28/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_5KPS_074 | 1/28/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.4 | |
| HL_5KPS_075 | 1/28/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_5KPS_076 | 1/28/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_5KPS_077 | 1/28/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_5KPS_078 | 1/28/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_5KPS_079 | 1/28/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5KPS_080 | 1/28/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_5KPS_081 | 1/28/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_5KPS_082 | 1/28/2142:2149 | No text annotation | geometric HL_4LFB_004 HL_48417.6 | |
| HL_5KPS_083 | 1/28/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_5KPS_084 | 1/28/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5KPS_085 | 1/28/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5KPS_112 | 1/28/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_5KPS_087 | 1/28/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_5KPS_088 | 1/28/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_5KPS_089 | 1/28/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_5KPS_090 | 1/28/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_5KPS_091 | 1/28/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_5KPS_092 | 1/28/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_5KPS_093 | 1/28/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_5KPS_094 | 1/28/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5KPS_095 | 1/28/2658:2663 | GNRA | geometric HL_1MZP_001 HL_37824.8 | |
| HL_5KPS_096 | 1/28/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_5KPS_097 | 1/28/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_5KPS_098 | 1/28/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_5KPS_099 | 1/28/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_5KPS_100 | 1/28/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_5KPS_110 | 1/29/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_5KPS_101 | 1/29/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_5KPS_102 | 1/29/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_5KPS_103 | 1/31/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20811.4 | |
| HL_5KPS_104 | 1/31/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_5KPS_105 | 1/31/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V9Q_215 HL_28252.9 | |
| HL_5KPS_106 | 1/32/13:22 | tRNA D-loop | homologous HL_5E81_211 HL_93616.2 | |
| HL_5KPS_107 | 1/32/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_5KPS_108 | 1/32/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5X6B_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5KPS_002 | No text annotation | ||
| HL_5KPS_086 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5KPS_001 | 1/27/30:32, 1/27/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_5KPS_002 | 1/27/44:45, 1/27/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_5KPS_003 | 1/27/47:52, 1/27/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_5KPS_004 | 1/27/54:56, 1/27/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_5KPS_005 | 1/27/63:66, 1/27/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_5KPS_006 | 1/27/67:69, 1/27/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_5KPS_007 | 1/27/70:73, 1/27/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_5KPS_008 | 1/27/75:76, 1/27/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.14 | |
| IL_5KPS_009 | 1/27/128:131, 1/27/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_5KPS_010 | 1/27/132:136, 1/27/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_5KPS_011 | 1/27/144:146, 1/27/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_5KPS_012 | 1/27/147:153, 1/27/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_5KPS_013 | 1/27/203:206, 1/27/213:214 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_5KPS_014 | 1/27/242:247, 1/27/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_5KPS_015 | 1/27/249:252, 1/27/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5KPS_016 | 1/27/292:293, 1/27/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5KPS_017 | 1/27/367:369, 1/27/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_5KPS_018 | 1/27/371:375, 1/27/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_5KPS_019 | 1/27/375:376, 1/27/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_5KPS_020 | 1/27/409:416, 1/27/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_5KPS_021 | 1/27/440:442, 1/27/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_5KPS_022 | 1/27/446:450, 1/27/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_5KPS_023 | 1/27/450:455, 1/27/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_5KPS_024 | 1/27/504:511, 1/27/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_5KPS_025 | 1/27/515:521, 1/27/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5KPS_026 | 1/27/569:575, 1/27/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_5KPS_027 | 1/27/580:584, 1/27/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_5KPS_028 | 1/27/594:596, 1/27/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_5KPS_029 | 1/27/597:598, 1/27/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_5KPS_030 | 1/27/605:612, 1/27/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_5KPS_031 | 1/27/654:655, 1/27/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_5KPS_032 | 1/27/659:660, 1/27/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_5KPS_033 | 1/27/662:666, 1/27/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_5KPS_178 | 1/27/673:677, 1/27/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_5KPS_035 | 1/27/684:688, 1/27/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_5KPS_036 | 1/27/774:778, 1/27/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_5KPS_037 | 1/27/779:783, 1/27/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_5KPS_038 | 1/27/887:894, 1/27/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_5KPS_039 | 1/27/922:923, 1/27/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_5KPS_040 | 1/27/925:927, 1/27/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_5KPS_041 | 1/27/933:935, 1/27/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_5KPS_042 | 1/27/953:954, 1/27/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5KPS_043 | 1/27/993:997, 1/27/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_5KPS_044 | 1/27/998:999, 1/27/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_5KPS_045 | 1/27/1048:1050, 1/27/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_5KPS_179 | 1/27/1052:1056, 1/27/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_5KPS_047 | 1/27/1057:1058, 1/27/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_5KPS_048 | 1/27/1060:1061, 1/27/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
| IL_5KPS_049 | 1/27/1061:1063, 1/27/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_5KPS_050 | 1/27/1124:1128, 1/27/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_5KPS_051 | 1/27/1129:1132, 1/27/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_5KPS_052 | 1/27/1158:1161, 1/27/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5KPS_053 | 1/27/1247:1253, 1/27/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_5KPS_054 | 1/27/1255:1258, 1/27/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_5KPS_055 | 1/27/1259:1263, 1/27/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_5KPS_056 | 1/27/1303:1308, 1/27/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5KPS_057 | 1/27/1399:1401, 1/27/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_5KPS_058 | 1/27/1401:1404, 1/27/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5KPS_059 | 1/27/1405:1407, 1/27/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_5KPS_060 | 1/27/1407:1409, 1/27/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_5KPS_061 | 1/27/1412:1414, 1/27/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5KPS_062 | 1/27/1416:1419, 1/27/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5KPS_063 | 1/27/1430:1435, 1/27/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_5KPS_064 | 1/27/1440:1442, 1/27/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_5KPS_065 | 1/27/1445:1448, 1/27/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_5KPS_066 | 1/28/24:30, 1/28/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_5KPS_067 | 1/28/36:37, 1/28/442:444 | Single bulged A | homologous IL_4WF9_002 IL_31462.7 | |
| IL_5KPS_068 | 1/28/43:44, 1/28/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_5KPS_069 | 1/28/81:85, 1/28/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_5KPS_070 | 1/28/183:184, 1/28/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_5KPS_071 | 1/28/188:194, 1/28/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_5KPS_072 | 1/28/239:245, 1/28/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_5KPS_073 | 1/28/269:271, 1/28/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_5KPS_187 | 1/28/274:281, 1/28/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_5KPS_075 | 1/28/293:295, 1/28/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_5KPS_076 | 1/28/481:484, 1/28/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_5KPS_077 | 1/28/536:539, 1/28/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_5KPS_078 | 1/28/564:566, 1/28/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_5KPS_079 | 1/28/606:610, 1/28/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_5KPS_080 | 1/28/672:674, 1/28/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_5KPS_081 | 1/28/674:678, 1/28/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5KPS_082 | 1/28/697:698, 1/28/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
| IL_5KPS_083 | 1/28/702:703, 1/28/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.14 | |
| IL_5KPS_084 | 1/28/703:707, 1/28/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_5KPS_085 | 1/28/738:740, 1/28/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_5KPS_086 | 1/28/775:777, 1/28/787:791 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
| IL_5KPS_087 | 1/28/837:838, 1/28/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_5KPS_088 | 1/28/844:847, 1/28/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_5KPS_180 | 1/28/844:848, 1/28/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_5KPS_089 | 1/28/847:848, 1/28/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_5KPS_090 | 1/28/850:851, 1/28/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_5KPS_091 | 1/28/856:862, 1/28/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_5KPS_092 | 1/28/862:863, 1/28/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.14 | |
| IL_5KPS_093 | 1/28/864:868, 1/28/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_5KPS_094 | 1/28/870:872, 1/28/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_5KPS_095 | 1/28/875:879, 1/28/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_5KPS_096 | 1/28/880:881, 1/28/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_5KPS_097 | 1/28/994:996, 1/28/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5KPS_098 | 1/28/998:1002, 1/28/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_5KPS_099 | 1/28/1004:1011, 1/28/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_5KPS_100 | 1/28/1011:1013, 1/28/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_5KPS_101 | 1/28/1018:1024, 1/28/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_5KPS_102 | 1/28/1024:1030, 1/28/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_5KPS_103 | 1/28/1031:1034, 1/28/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5KPS_104 | 1/28/1038:1041, 1/28/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_5KPS_105 | 1/28/1043:1051, 1/28/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_5KPS_106 | 1/28/1059:1062, 1/28/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_5KPS_107 | 1/28/1087:1090, 1/28/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_5KPS_108 | 1/28/1196:1198, 1/28/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_5KPS_109 | 1/28/1202:1206, 1/28/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5KPS_110 | 1/28/1208:1215, 1/28/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_5KPS_111 | 1/28/1262:1269, 1/28/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_5KPS_112 | 1/28/1310:1313, 1/28/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_5KPS_113 | 1/28/1319:1323, 1/28/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_5KPS_114 | 1/28/1351:1355, 1/28/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_5KPS_115 | 1/28/1357:1361, 1/28/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_5KPS_116 | 1/28/1415:1416, 1/28/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_5KPS_117 | 1/28/1417:1421, 1/28/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_5KPS_118 | 1/28/1432:1435, 1/28/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_5KPS_119 | 1/28/1437:1440, 1/28/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_5KPS_120 | 1/28/1450:1451, 1/28/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_5KPS_121 | 1/28/1468:1471, 1/28/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_5KPS_122 | 1/28/1474:1478, 1/28/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_5KPS_123 | 1/28/1481:1482, 1/28/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_5KPS_124 | 1/28/1489:1491, 1/28/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_5KPS_125 | 1/28/1526:1529, 1/28/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_5KPS_126 | 1/28/1651:1656, 1/28/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_5KPS_127 | 1/28/1663:1665, 1/28/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_5KPS_128 | 1/28/1666:1669, 1/28/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4V9F_061 IL_50694.7 | |
| IL_5KPS_181 | 1/28/1666:1674, 1/28/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_5KPS_129 | 1/28/1669:1674, 1/28/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_5KPS_130 | 1/28/1686:1691, 1/28/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_5KPS_131 | 1/28/1712:1718, 1/28/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_5KPS_132 | 1/28/1720:1724, 1/28/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_5KPS_133 | 1/28/1727:1728, 1/28/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_5KPS_134 | 1/28/1770:1771, 1/28/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_31462.7 | |
| IL_5KPS_135 | 1/28/1798:1804, 1/28/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_5KPS_136 | 1/28/1837:1840, 1/28/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5KPS_137 | 1/28/1841:1842, 1/28/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_5KPS_138 | 1/28/1846:1849, 1/28/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_5KPS_182 | 1/28/1851:1860, 1/28/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_5KPS_139 | 1/28/1864:1867, 1/28/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_5KPS_140 | 1/28/1933:1934, 1/28/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_5KPS_141 | 1/28/1934:1945, 1/28/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_5KPS_142 | 1/28/2050:2052, 1/28/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_5KPS_143 | 1/28/2054:2056, 1/28/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_5KPS_144 | 1/28/2067:2069, 1/28/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_5KPS_145 | 1/28/2070:2071, 1/28/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5KPS_146 | 1/28/2081:2083, 1/28/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_5KPS_147 | 1/28/2085:2087, 1/28/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_5KPS_148 | 1/28/2103:2105, 1/28/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4NGF_002 IL_87907.2 | |
| IL_5KPS_183 | 1/28/2106:2121, 1/28/2177:2183 | No text annotation | ||
| IL_5KPS_185 | 1/28/2124:2137, 1/28/2154:2174 | No text annotation | ||
| IL_5KPS_186 | 1/28/2139:2142, 1/28/2149:2152 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_5KPS_150 | 1/28/2202:2204, 1/28/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_5KPS_151 | 1/28/2350:2353, 1/28/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_5KPS_152 | 1/28/2401:2403, 1/28/2414:2415 | No text annotation | ||
| IL_5KPS_153 | 1/28/2453:2454, 1/28/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_5KPS_154 | 1/28/2454:2455, 1/28/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_5KPS_155 | 1/28/2456:2459, 1/28/2493:2495 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_5KPS_156 | 1/28/2459:2461, 1/28/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.3 | |
| IL_5KPS_157 | 1/28/2466:2470, 1/28/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_5KPS_158 | 1/28/2507:2509, 1/28/2579:2582 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_5KPS_159 | 1/28/2510:2512, 1/28/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_5KPS_160 | 1/28/2512:2513, 1/28/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_5KPS_161 | 1/28/2522:2523, 1/28/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5KPS_162 | 1/28/2591:2592, 1/28/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5KPS_163 | 1/28/2636:2640, 1/28/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_5KPS_164 | 1/28/2652:2658, 1/28/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5KPS_165 | 1/28/2680:2684, 1/28/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_5KPS_166 | 1/28/2687:2691, 1/28/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_5KPS_167 | 1/28/2695:2696, 1/28/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_5KPS_168 | 1/28/2737:2742, 1/28/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5KPS_169 | 1/28/2806:2811, 1/28/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_5KPS_170 | 1/28/2838:2839, 1/28/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_5KPS_171 | 1/28/2843:2846, 1/28/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_5KPS_172 | 1/28/2847:2852, 1/28/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_5KPS_173 | 1/29/17:18, 1/29/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_5KPS_174 | 1/29/23:28, 1/29/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_5KPS_175 | 1/29/30:31, 1/29/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_5KPS_176 | 1/29/34:38, 1/29/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_5KPS_177 | 1/29/71:79, 1/29/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5KPS_034 | No text annotation | ||
| IL_5KPS_046 | Tandem non-canonical cWW pairs | ||
| IL_5KPS_074 | No text annotation | ||
| IL_5KPS_149 | No text annotation | ||
| IL_5KPS_184 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5KPS_001 | 1/27/46:47, 1/27/361:367, 1/27/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_5KPS_028 | 1/27/46:52, 1/27/359:367, 1/27/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_5KPS_002 | 1/27/586:588, 1/27/651:654, 1/27/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_5KPS_029 | 1/27/586:588, 1/27/651:655, 1/27/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_5KPS_003 | 1/27/672:673, 1/27/717:725, 1/27/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_5KPS_004 | 1/27/826:829, 1/27/857:861, 1/27/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_5KPS_005 | 1/27/936:939, 1/27/1344:1350, 1/27/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5KPS_006 | 1/27/943:946, 1/27/1235:1237, 1/27/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_5KPS_007 | 1/27/955:962, 1/27/973:984, 1/27/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_5KPS_008 | 1/27/990:993, 1/27/1045:1047, 1/27/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_5KPS_030 | 1/27/990:997, 1/27/1044:1047, 1/27/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_5KPS_009 | 1/27/1003:1006, 1/27/1023:1027, 1/27/1034:1037 | No text annotation | ||
| J3_5KPS_010 | 1/27/1063:1068, 1/27/1107:1113, 1/27/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_5KPS_032 | 1/27/1073:1074, 1/27/1083:1086, 1/27/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5KPS_012 | 1/27/1116:1118, 1/27/1155:1158, 1/27/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_5KPS_033 | 1/27/1116:1118, 1/27/1155:1161, 1/27/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5KPS_013 | 1/27/1237:1241, 1/27/1296:1303, 1/27/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_5KPS_014 | 1/28/30:31, 1/28/474:481, 1/28/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_5KPS_034 | 1/28/30:31, 1/28/474:484, 1/28/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_5KPS_035 | 1/28/32:35, 1/28/445:461, 1/28/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_5KPS_015 | 1/28/56:57, 1/28/70:76, 1/28/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_5KPS_036 | 1/28/297:301, 1/28/316:325, 1/28/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_5KPS_016 | 1/28/683:689, 1/28/773:775, 1/28/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_5KPS_017 | 1/28/698:700, 1/28/732:736, 1/28/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5KPS_018 | 1/28/1055:1057, 1/28/1081:1087, 1/28/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_5KPS_019 | 1/28/1298:1303, 1/28/1625:1627, 1/28/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_5KPS_020 | 1/28/1306:1309, 1/28/1605:1611, 1/28/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_5KPS_021 | 1/28/1344:1349, 1/28/1382:1385, 1/28/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_5KPS_037 | 1/28/1424:1429, 1/28/1564:1565, 1/28/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_5KPS_022 | 1/28/2091:2093, 1/28/2196:2200, 1/28/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_5KPS_038 | 1/28/2282:2284, 1/28/2384:2395, 1/28/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_5KPS_023 | 1/28/2295:2299, 1/28/2317:2323, 1/28/2332:2337 | No text annotation | ||
| J3_5KPS_024 | 1/28/2517:2520, 1/28/2545:2547, 1/28/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_5KPS_025 | 1/28/2789:2791, 1/28/2805:2806, 1/28/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_5KPS_026 | 1/28/2812:2815, 1/28/2831:2836, 1/28/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_5KPS_027 | 1/29/10:16, 1/29/68:70, 1/29/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_5KPS_001 | 1/27/115:122, 1/27/239:240, 1/27/286:289, 1/27/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_5KPS_002 | 1/27/142:144, 1/27/178:184, 1/27/193:198, 1/27/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_5KPS_003 | 1/27/575:577, 1/27/764:769, 1/27/810:821, 1/27/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_5KPS_004 | 1/28/268:269, 1/28/370:375, 1/28/399:406, 1/28/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_5KPS_005 | 1/28/601:604, 1/28/624:628, 1/28/635:638, 1/28/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_5KPS_006 | 1/28/1270:1276, 1/28/1294:1295, 1/28/1645:1648, 1/28/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_5KPS_007 | 1/28/1310:1314, 1/28/1338:1343, 1/28/1404:1405, 1/28/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_5KPS_008 | 1/28/1313:1314, 1/28/1338:1343, 1/28/1404:1405, 1/28/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_5KPS_009 | 1/28/1444:1445, 1/28/1466:1467, 1/28/1525:1526, 1/28/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_5KPS_010 | 1/28/1772:1776, 1/28/1788:1792, 1/28/1827:1830, 1/28/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_5KPS_011 | 1/28/1833:1835, 1/28/1905:1906, 1/28/1924:1933, 1/28/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5KPS_012 | 1/28/2285:2289, 1/28/2343:2347, 1/28/2370:2372, 1/28/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_5KPS_013 | 1/28/2643:2646, 1/28/2674:2676, 1/28/2731:2735, 1/28/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_5KPS_014 | 1/31/7:10, 1/31/25:27, 1/31/43:49, 1/31/65:66 | No text annotation | homologous J4_6UFM_001 J4_70449.29 | |
| J4_5KPS_015 | 1/32/7:10, 1/32/25:27, 1/32/43:49, 1/32/65:66 | tRNA junction | homologous J4_3AMU_002 J4_70449.29 | |
| J5_5KPS_001 | 1/27/36:39, 1/27/403:406, 1/27/436:440, 1/27/497:500, 1/27/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_5KPS_002 | 1/27/36:39, 1/27/403:406, 1/27/436:442, 1/27/492:500, 1/27/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_5KPS_003 | 1/27/58:61, 1/27/106:113, 1/27/314:316, 1/27/337:339, 1/27/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_5KPS_004 | 1/28/47:54, 1/28/116:121, 1/28/130:131, 1/28/148:150, 1/28/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_5KPS_005 | 1/28/531:533, 1/28/560:564, 1/28/577:579, 1/28/1261:1262, 1/28/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_5KPS_006 | 1/28/584:589, 1/28/668:671, 1/28/809:812, 1/28/1195:1196, 1/28/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_5KPS_007 | 1/28/1674:1682, 1/28/1706:1707, 1/28/1751:1752, 1/28/1756:1764, 1/28/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_5KPS_008 | 1/28/2057:2064, 1/28/2446:2453, 1/28/2500:2507, 1/28/2582:2588, 1/28/2606:2611 | No text annotation | ||
| J5_5KPS_009 | 1/28/2074:2077, 1/28/2243:2246, 1/28/2258:2259, 1/28/2281:2282, 1/28/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_5KPS_001 | 1/28/45:46, 1/28/179:183, 1/28/214:224, 1/28/231:235, 1/28/262:266, 1/28/426:433 | No text annotation | ||
| J6_5KPS_002 | 1/28/2074:2077, 1/28/2243:2246, 1/28/2258:2259, 1/28/2281:2284, 1/28/2384:2395, 1/28/2421:2435 | No text annotation | ||
| J7_5KPS_001 | 1/28/8:15, 1/28/525:531, 1/28/2018:2023, 1/28/2040:2043, 1/28/2625:2630, 1/28/2788:2789, 1/28/2894:2895 | No text annotation | ||
| J7_5KPS_002 | 1/28/817:822, 1/28/835:837, 1/28/942:946, 1/28/971:976, 1/28/987:991, 1/28/1163:1164, 1/28/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5KPS_031 | No text annotation | ||
| J3_5KPS_011 | No text annotation |
Coloring options: