Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5KPS_0011/27/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_5KPS_0061/27/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_5KPS_0071/27/296:301GNRA
homologous
HL_5J7L_007
NA
HL_5KPS_0081/27/320:333No text annotation
homologous
HL_5J7L_008
NA
HL_5KPS_0091/27/342:347UNCG
homologous
HL_6CZR_080
NA
HL_5KPS_0131/27/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_5KPS_0141/27/617:623GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_5KPS_0151/27/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_5KPS_0161/27/726:731GNRA
homologous
HL_5J7L_016
NA
HL_5KPS_0171/27/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.1
HL_5KPS_0191/27/862:867GNRA
homologous
HL_4LFB_019
HL_34789.1
HL_5KPS_0201/27/897:902GNRA
homologous
HL_5J7L_020
NA
HL_5KPS_0211/27/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_5KPS_0241/27/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_5KPS_0261/27/1134:1140No text annotation
homologous
HL_4LFB_026
HL_92935.1
HL_5KPS_0291/27/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_5KPS_0301/27/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_5KPS_0321/27/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_5KPS_0331/28/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_5KPS_0341/28/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_5KPS_0351/28/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_5KPS_0371/28/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_5KPS_0381/28/194:201No text annotation
homologous
HL_5J7L_139
NA
HL_5KPS_0391/28/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_5KPS_0401/28/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_5KPS_0421/28/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_5KPS_0431/28/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_5KPS_0441/28/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_5KPS_0451/28/462:467GNRA
homologous
HL_4WF9_015
HL_34789.1
HL_5KPS_0461/28/487:493GNRA
homologous
HL_5J7L_148
NA
HL_5KPS_0481/28/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_5KPS_0501/28/629:634GNRA
homologous
HL_5J7L_152
NA
HL_5KPS_0511/28/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_5KPS_0531/28/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_5KPS_0541/28/779:785UNCG variation
geometric
HL_2NUE_001
NA
HL_5KPS_0551/28/826:831No text annotation
homologous
HL_5J7L_157
NA
HL_5KPS_0571/28/954:963tRNA anticodon loop
geometric
HL_3RG5_006
HL_45359.1
HL_5KPS_0581/28/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_5KPS_0621/28/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_5KPS_0631/28/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_5KPS_0641/28/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_5KPS_0651/28/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_5KPS_0661/28/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_5KPS_1091/28/1450:1461UNCG variation
geometric
HL_5J7L_200
NA
HL_5KPS_0671/28/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
NA
HL_5KPS_0681/28/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_5KPS_0701/28/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_5KPS_0711/28/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.1
HL_5KPS_0721/28/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_5KPS_0731/28/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_5KPS_0751/28/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_5KPS_0761/28/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_5KPS_0771/28/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_5KPS_0791/28/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_5KPS_0801/28/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5KPS_0811/28/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_5KPS_0831/28/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_5KPS_0841/28/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_5KPS_0851/28/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_5KPS_1121/28/2304:2312No text annotation
homologous
HL_9DFE_198
HL_02452.1
HL_5KPS_0871/28/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_5KPS_0881/28/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_5KPS_0891/28/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_5KPS_0901/28/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_5KPS_0911/28/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_5KPS_0921/28/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_5KPS_0931/28/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_5KPS_0941/28/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_5KPS_0961/28/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_5KPS_0971/28/2745:2759No text annotation
homologous
HL_4WF9_062
HL_53269.1
HL_5KPS_0991/28/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_5KPS_1001/28/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_5KPS_1101/29/34:48No text annotation
homologous
HL_4V9F_074
HL_97756.3
HL_5KPS_1011/29/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_5KPS_1021/29/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_5KPS_1031/31/13:22tRNA D-loop
homologous
HL_5B63_003
HL_65478.1
HL_5KPS_1041/31/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.1

Problematic loops

#loop idProblemSequence
HL_5KPS_002No text annotation
HL_5KPS_111No text annotation
HL_5KPS_003GNRA
HL_5KPS_004GNRA
HL_5KPS_005No text annotation
HL_5KPS_010GNRA
HL_5KPS_011UNCG
HL_5KPS_012GNRA wlth extra near cWW
HL_5KPS_018Externally structured
HL_5KPS_022GNRA
HL_5KPS_023No text annotation
HL_5KPS_025T-loop related
HL_5KPS_027GNRA
HL_5KPS_028GNRA
HL_5KPS_031UNCG
HL_5KPS_036No text annotation
HL_5KPS_041T-loop with 2 stacked bulged bases
HL_5KPS_047Mini UNCG with extended bulge
HL_5KPS_049No text annotation
HL_5KPS_052GNRA wlth tandem sheared
HL_5KPS_056No text annotation
HL_5KPS_059No text annotation
HL_5KPS_060GNRA wlth tandem sheared
HL_5KPS_061No text annotation
HL_5KPS_069UNCG
HL_5KPS_074No text annotation
HL_5KPS_078GNRA variation
HL_5KPS_082No text annotation
HL_5KPS_086No text annotation
HL_5KPS_095GNRA
HL_5KPS_098UNCG variation
HL_5KPS_105T-loop with 2 stacked bulged bases
HL_5KPS_106tRNA D-loop
HL_5KPS_107tRNA anticodon loop
HL_5KPS_108T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5KPS_0011/27/30:32,
1/27/552:553
Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_5KPS_0021/27/44:45,
1/27/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_5KPS_0031/27/47:52,
1/27/359:361
No text annotation
geometric
IL_5J7L_003
NA
IL_5KPS_0051/27/63:66,
1/27/103:104
Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_5KPS_0091/27/128:131,
1/27/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_5KPS_0101/27/132:136,
1/27/227:230
Minor groove platform related
homologous
IL_5J7L_010
NA
IL_5KPS_0111/27/144:146,
1/27/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_5KPS_0121/27/147:153,
1/27/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_5KPS_0141/27/242:247,
1/27/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_5KPS_0151/27/249:252,
1/27/274:275
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_5KPS_0161/27/292:293,
1/27/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_5KPS_0171/27/367:369,
1/27/392:393
Single bulged U
homologous
IL_5J7L_017
NA
IL_5KPS_0181/27/371:375,
1/27/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_5KPS_0191/27/375:376,
1/27/387:389
Single bulged G
homologous
IL_4LFB_016
IL_28408.1
IL_5KPS_0211/27/440:442,
1/27/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_5KPS_0241/27/504:511,
1/27/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_5KPS_0251/27/515:521,
1/27/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_5KPS_0261/27/569:575,
1/27/880:881
No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_5KPS_0271/27/580:584,
1/27/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_5KPS_0291/27/597:598,
1/27/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
NA
IL_5KPS_0301/27/605:612,
1/27/628:633
No text annotation
homologous
IL_5J7L_030
NA
IL_5KPS_0331/27/662:666,
1/27/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_5KPS_1781/27/673:677,
1/27/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_5KPS_0351/27/684:688,
1/27/699:706
Kink-turn
homologous
IL_5J7L_035
NA
IL_5KPS_0361/27/774:778,
1/27/804:805
Left turn
homologous
IL_5J7L_036
NA
IL_5KPS_0371/27/779:783,
1/27/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_5KPS_0381/27/887:894,
1/27/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_5KPS_0391/27/922:923,
1/27/1393:1395
Single bulged A
homologous
IL_6CZR_147
NA
IL_5KPS_0401/27/925:927,
1/27/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.1
IL_5KPS_0411/27/933:935,
1/27/1380:1384
Minor groove platform
homologous
IL_4LFB_037
IL_61370.1
IL_5KPS_0421/27/953:954,
1/27/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_5KPS_0431/27/993:997,
1/27/1044:1045
Minor groove platform
homologous
IL_5J7L_043
NA
IL_5KPS_0441/27/998:999,
1/27/1041:1043
Single stack bend
homologous
IL_5J7L_044
NA
IL_5KPS_0451/27/1048:1050,
1/27/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_97561.1
IL_5KPS_1791/27/1052:1056,
1/27/1204:1206
No text annotation
homologous
IL_6CZR_154
NA
IL_5KPS_0471/27/1057:1058,
1/27/1199:1203
Minor groove platform
homologous
IL_5J7L_048
NA
IL_5KPS_0481/27/1060:1061,
1/27/1195:1197
Single bulged A
homologous
IL_5J7L_049
NA
IL_5KPS_0491/27/1061:1063,
1/27/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.1
IL_5KPS_0501/27/1124:1128,
1/27/1144:1149
No text annotation
homologous
IL_5J7L_051
NA
IL_5KPS_0531/27/1247:1253,
1/27/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_5KPS_0541/27/1255:1258,
1/27/1277:1282
180 degree turn
homologous
IL_5J7L_055
NA
IL_5KPS_0551/27/1259:1263,
1/27/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_5KPS_0571/27/1399:1401,
1/27/1501:1504
No text annotation
homologous
IL_5J7L_058
NA
IL_5KPS_0581/27/1401:1404,
1/27/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_5KPS_0591/27/1405:1407,
1/27/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_5KPS_0601/27/1407:1409,
1/27/1491:1494
Decoding loop related
geometric
IL_3C3Z_002
IL_29925.1
IL_5KPS_0621/27/1416:1419,
1/27/1481:1484
Double sheared
homologous
IL_5J7L_062
NA
IL_5KPS_0631/27/1430:1435,
1/27/1466:1470
Triple sheared related
homologous
IL_5J7L_063
NA
IL_5KPS_0661/28/24:30,
1/28/510:516
Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
NA
IL_5KPS_0671/28/36:37,
1/28/442:444
Single bulged A
homologous
IL_4WF9_002
IL_14190.1
IL_5KPS_0681/28/43:44,
1/28/434:436
Minor groove platform
homologous
IL_5J7L_247
NA
IL_5KPS_0691/28/81:85,
1/28/97:105
No text annotation
homologous
IL_5J7L_248
NA
IL_5KPS_0701/28/183:184,
1/28/212:214
Single stack bend
homologous
IL_5J7L_249
NA
IL_5KPS_0711/28/188:194,
1/28/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_5KPS_0721/28/239:245,
1/28/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_5KPS_0731/28/269:271,
1/28/366:370
No text annotation
homologous
IL_5J7L_252
NA
IL_5KPS_0751/28/293:295,
1/28/343:347
No text annotation
homologous
IL_5J7L_254
NA
IL_5KPS_0761/28/481:484,
1/28/496:509
No text annotation
geometric
IL_5J7L_255
NA
IL_5KPS_0771/28/536:539,
1/28/554:557
Double sheared
homologous
IL_5J7L_256
NA
IL_5KPS_0781/28/564:566,
1/28/575:577
Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_5KPS_0791/28/606:610,
1/28/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_5KPS_0801/28/672:674,
1/28/806:808
Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.1
IL_5KPS_0811/28/674:678,
1/28/799:806
tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_5KPS_0821/28/697:698,
1/28/763:765
Single bulged A
homologous
IL_5J7L_261
NA
IL_5KPS_0831/28/702:703,
1/28/728:730
Single bulged G
homologous
IL_4WF9_023
IL_28408.1
IL_5KPS_0841/28/703:707,
1/28/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_5KPS_0851/28/738:740,
1/28/757:758
Major groove platform
homologous
IL_4WF9_026
IL_48076.7
IL_5KPS_0861/28/775:777,
1/28/787:791
Multiple bulged bases
homologous
IL_7A0S_021
IL_89509.1
IL_5KPS_0871/28/837:838,
1/28/940:942
Single stack bend
homologous
IL_4WF9_028
IL_15011.1
IL_5KPS_0881/28/844:847,
1/28/933:934
90 degree turn
homologous
IL_5J7L_267
NA
IL_5KPS_1801/28/844:848,
1/28/930:934
No text annotation
homologous
IL_5J7L_399
NA
IL_5KPS_0891/28/847:848,
1/28/930:933
Stack outside cWW
geometric
IL_5J7L_268
NA
IL_5KPS_0901/28/850:851,
1/28/926:928
Single stack bend
homologous
IL_5J7L_269
NA
IL_5KPS_0921/28/862:863,
1/28/913:915
Single bulged G
homologous
IL_5J7L_271
NA
IL_5KPS_0931/28/864:868,
1/28/909:912
C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_5KPS_0941/28/870:872,
1/28/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_5KPS_0971/28/994:996,
1/28/1159:1160
Single bulged C
homologous
IL_5J7L_276
NA
IL_5KPS_0981/28/998:1002,
1/28/1153:1157
UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_5KPS_0991/28/1004:1011,
1/28/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_5KPS_1001/28/1011:1013,
1/28/1149:1150
Single bulged U
homologous
IL_5J7L_279
NA
IL_5KPS_1011/28/1018:1024,
1/28/1140:1144
Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_5KPS_1021/28/1024:1030,
1/28/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_5KPS_1031/28/1031:1034,
1/28/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_5KPS_1081/28/1196:1198,
1/28/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.4
IL_5KPS_1091/28/1202:1206,
1/28/1240:1243
No text annotation
homologous
IL_5J7L_287
NA
IL_5KPS_1101/28/1208:1215,
1/28/1234:1238
Kink-turn
homologous
IL_5J7L_288
NA
IL_5KPS_1111/28/1262:1269,
1/28/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_5KPS_1121/28/1310:1313,
1/28/1603:1604
Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.1
IL_5KPS_1131/28/1319:1323,
1/28/1331:1333
C-loop
homologous
IL_5J7L_291
NA
IL_5KPS_1141/28/1351:1355,
1/28/1376:1380
UAA/GAN
homologous
IL_5J7L_292
NA
IL_5KPS_1151/28/1357:1361,
1/28/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_5KPS_1181/28/1432:1435,
1/28/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_5KPS_1191/28/1437:1440,
1/28/1551:1555
tSH-tHW
homologous
IL_5J7L_297
NA
IL_5KPS_1211/28/1468:1471,
1/28/1520:1524
No text annotation
homologous
IL_5J7L_299
NA
IL_5KPS_1221/28/1474:1478,
1/28/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_5KPS_1231/28/1481:1482,
1/28/1507:1510
180 degree turn
homologous
IL_5J7L_301
NA
IL_5KPS_1241/28/1489:1491,
1/28/1499:1500
Single bulged A
homologous
IL_5J7L_302
NA
IL_5KPS_1251/28/1526:1529,
1/28/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_5KPS_1261/28/1651:1656,
1/28/2004:2006
No text annotation
homologous
IL_5J7L_304
NA
IL_5KPS_1271/28/1663:1665,
1/28/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_5KPS_1281/28/1666:1669,
1/28/1993:1994
Major groove platform; stack outside cWW
geometric
IL_4V9F_061
IL_74641.1
IL_5KPS_1811/28/1666:1674,
1/28/1990:1994
No text annotation
homologous
IL_5J7L_386
NA
IL_5KPS_1291/28/1669:1674,
1/28/1990:1993
Intercalated tWH
homologous
IL_5J7L_307
NA
IL_5KPS_1301/28/1686:1691,
1/28/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
NA
IL_5KPS_1311/28/1712:1718,
1/28/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_5KPS_1341/28/1770:1771,
1/28/1980:1982
Single bulged A
homologous
IL_7A0S_064
IL_14190.1
IL_5KPS_1351/28/1798:1804,
1/28/1813:1821
Kink-turn related
homologous
IL_5J7L_313
NA
IL_5KPS_1361/28/1837:1840,
1/28/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_5KPS_1371/28/1841:1842,
1/28/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_5KPS_1381/28/1846:1849,
1/28/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_5KPS_1821/28/1851:1860,
1/28/1882:1891
No text annotation
homologous
IL_5J7L_387
NA
IL_5KPS_1391/28/1864:1867,
1/28/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_5KPS_1401/28/1933:1934,
1/28/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_5KPS_1411/28/1934:1945,
1/28/1961:1964
No text annotation
homologous
IL_4WF9_077
IL_84014.1
IL_5KPS_1421/28/2050:2052,
1/28/2617:2618
Major groove platform
homologous
IL_5J7L_320
NA
IL_5KPS_1431/28/2054:2056,
1/28/2612:2615
No text annotation
homologous
IL_5J7L_321
NA
IL_5KPS_1441/28/2067:2069,
1/28/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_5KPS_1451/28/2070:2071,
1/28/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_5KPS_1461/28/2081:2083,
1/28/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_5KPS_1471/28/2085:2087,
1/28/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_5KPS_1501/28/2202:2204,
1/28/2220:2221
Single bulged U
homologous
IL_5J7L_331
NA
IL_5KPS_1521/28/2401:2403,
1/28/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.1
IL_5KPS_1531/28/2453:2454,
1/28/2498:2500
Single stack bend
homologous
IL_4WF9_089
IL_15011.1
IL_5KPS_1541/28/2454:2455,
1/28/2496:2498
Major groove platform
geometric
IL_4V9F_082
IL_48076.7
IL_5KPS_1561/28/2459:2461,
1/28/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
NA
IL_5KPS_1571/28/2466:2470,
1/28/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_5KPS_1581/28/2507:2509,
1/28/2579:2582
Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_5KPS_1591/28/2510:2512,
1/28/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_5KPS_1601/28/2512:2513,
1/28/2571:2574
No text annotation
geometric
IL_5J7L_341
NA
IL_5KPS_1611/28/2522:2523,
1/28/2540:2543
Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_5KPS_1621/28/2591:2592,
1/28/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_5KPS_1631/28/2636:2640,
1/28/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_5KPS_1641/28/2652:2658,
1/28/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_5KPS_1651/28/2680:2684,
1/28/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_5KPS_1661/28/2687:2691,
1/28/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_5KPS_1671/28/2695:2696,
1/28/2711:2714
Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.1
IL_5KPS_1681/28/2737:2742,
1/28/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_5KPS_1691/28/2806:2811,
1/28/2889:2892
No text annotation
geometric
IL_5J7L_351
NA
IL_5KPS_1701/28/2838:2839,
1/28/2878:2880
Major groove intercalation
homologous
IL_5J7L_352
NA
IL_5KPS_1711/28/2843:2846,
1/28/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_5KPS_1721/28/2847:2852,
1/28/2865:2869
tHS double platform
homologous
IL_5J7L_354
NA
IL_5KPS_1761/29/34:38,
1/29/44:48
Symmetric double minor groove platform
homologous
IL_5J7L_358
NA
IL_5KPS_1771/29/71:79,
1/29/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA

Problematic loops

#loop idProblemSequence
IL_5KPS_004Minor groove platform
IL_5KPS_006Minor groove platform with extra cWW
IL_5KPS_007Minor groove platform
IL_5KPS_008Single bulged G
IL_5KPS_013Minor groove platform
IL_5KPS_020No text annotation
IL_5KPS_022tSH-tHW-tWW
IL_5KPS_023No text annotation
IL_5KPS_028Major groove platform
IL_5KPS_031Major groove platform; stack outside cWW
IL_5KPS_032Single stack bend
IL_5KPS_034No text annotation
IL_5KPS_046Tandem non-canonical cWW pairs
IL_5KPS_051Minor groove platform
IL_5KPS_052No text annotation
IL_5KPS_056No text annotation
IL_5KPS_061Isolated non-canonical cWW pair
IL_5KPS_064Single bulged A
IL_5KPS_065No text annotation
IL_5KPS_187No text annotation
IL_5KPS_074No text annotation
IL_5KPS_0917x7 Sarcin-Ricin with intercalated A; G-bulge
IL_5KPS_095Double sheared with non-canonical cWW
IL_5KPS_096Single bulged A
IL_5KPS_104Tandem non-canonical cWW pairs
IL_5KPS_105Kink-turn
IL_5KPS_106No text annotation
IL_5KPS_107No text annotation
IL_5KPS_116No text annotation
IL_5KPS_117UAA/GAN
IL_5KPS_120Single bulged U
IL_5KPS_132Triple sheared
IL_5KPS_133Single bulged C
IL_5KPS_148Isolated non-canonical cWW pair
IL_5KPS_149No text annotation
IL_5KPS_183No text annotation
IL_5KPS_184No text annotation
IL_5KPS_185No text annotation
IL_5KPS_186Tandem non-canonical cWW pairs
IL_5KPS_151Double sheared
IL_5KPS_155Major groove platform with extra pair
IL_5KPS_173Major groove intercalation
IL_5KPS_174No text annotation
IL_5KPS_175Major groove minor groove platform; mini C-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5KPS_0011/27/46:47,
1/27/361:367,
1/27/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_5KPS_0281/27/46:52,
1/27/359:367,
1/27/393:395
No text annotation
homologous
J3_5J7L_050
NA
J3_5KPS_0021/27/586:588,
1/27/651:654,
1/27/754:755
No text annotation
homologous
J3_5J7L_002
NA
J3_5KPS_0291/27/586:588,
1/27/651:655,
1/27/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_5KPS_0031/27/672:673,
1/27/717:725,
1/27/732:734
No text annotation
homologous
J3_5J7L_003
NA
J3_5KPS_0041/27/826:829,
1/27/857:861,
1/27/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_5KPS_0051/27/936:939,
1/27/1344:1350,
1/27/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_5KPS_0061/27/943:946,
1/27/1235:1237,
1/27/1337:1340
No text annotation
homologous
J3_5J7L_005
NA
J3_5KPS_0071/27/955:962,
1/27/973:984,
1/27/1221:1225
No text annotation
homologous
J3_5J7L_006
NA
J3_5KPS_0081/27/990:993,
1/27/1045:1047,
1/27/1210:1215
No text annotation
homologous
J3_5J7L_007
NA
J3_5KPS_0301/27/990:997,
1/27/1044:1047,
1/27/1210:1215
No text annotation
homologous
J3_5J7L_053
NA
J3_5KPS_0101/27/1063:1068,
1/27/1107:1113,
1/27/1187:1193
No text annotation
homologous
J3_5J7L_008
NA
J3_5KPS_0321/27/1073:1074,
1/27/1083:1086,
1/27/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_5KPS_0121/27/1116:1118,
1/27/1155:1158,
1/27/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_5KPS_0331/27/1116:1118,
1/27/1155:1161,
1/27/1175:1184
No text annotation
homologous
J3_5J7L_054
NA
J3_5KPS_0131/27/1237:1241,
1/27/1296:1303,
1/27/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J3_5KPS_0141/28/30:31,
1/28/474:481,
1/28/509:510
No text annotation
homologous
J3_5J7L_036
NA
J3_5KPS_0341/28/30:31,
1/28/474:484,
1/28/496:510
No text annotation
homologous
J3_5J7L_066
NA
J3_5KPS_0351/28/32:35,
1/28/445:461,
1/28/468:473
No text annotation
homologous
J3_5J7L_067
NA
J3_5KPS_0151/28/56:57,
1/28/70:76,
1/28/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_5KPS_0361/28/297:301,
1/28/316:325,
1/28/337:341
No text annotation
homologous
J3_5J7L_068
NA
J3_5KPS_0161/28/683:689,
1/28/773:775,
1/28/791:794
No text annotation
homologous
J3_5J7L_038
NA
J3_5KPS_0171/28/698:700,
1/28/732:736,
1/28/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_5KPS_0191/28/1298:1303,
1/28/1625:1627,
1/28/1639:1642
No text annotation
homologous
J3_5J7L_041
NA
J3_5KPS_0201/28/1306:1309,
1/28/1605:1611,
1/28/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_5KPS_0211/28/1344:1349,
1/28/1382:1385,
1/28/1402:1403
No text annotation
homologous
J3_5J7L_043
NA
J3_5KPS_0371/28/1424:1429,
1/28/1564:1565,
1/28/1568:1574
No text annotation
homologous
J3_5J7L_069
NA
J3_5KPS_0221/28/2091:2093,
1/28/2196:2200,
1/28/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_5KPS_0381/28/2282:2284,
1/28/2384:2395,
1/28/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_5KPS_0231/28/2295:2299,
1/28/2317:2323,
1/28/2332:2337
No text annotation
J3_5KPS_0241/28/2517:2520,
1/28/2545:2547,
1/28/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J3_5KPS_0261/28/2812:2815,
1/28/2831:2836,
1/28/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J3_5KPS_0271/29/10:16,
1/29/68:70,
1/29/106:110
No text annotation
homologous
J3_5J7L_049
NA
J4_5KPS_0011/27/115:122,
1/27/239:240,
1/27/286:289,
1/27/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_5KPS_0021/27/142:144,
1/27/178:184,
1/27/193:198,
1/27/219:221
No text annotation
homologous
J4_5J7L_002
NA
J4_5KPS_0031/27/575:577,
1/27/764:769,
1/27/810:821,
1/27/879:880
No text annotation
homologous
J4_5J7L_003
NA
J4_5KPS_0041/28/268:269,
1/28/370:375,
1/28/399:406,
1/28/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_5KPS_0061/28/1270:1276,
1/28/1294:1295,
1/28/1645:1648,
1/28/2009:2010
No text annotation
homologous
J4_5J7L_021
NA
J4_5KPS_0071/28/1310:1314,
1/28/1338:1343,
1/28/1404:1405,
1/28/1597:1604
No text annotation
homologous
J4_5J7L_022
NA
J4_5KPS_0081/28/1313:1314,
1/28/1338:1343,
1/28/1404:1405,
1/28/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J4_5KPS_0091/28/1444:1445,
1/28/1466:1467,
1/28/1525:1526,
1/28/1546:1547
No text annotation
homologous
J4_5J7L_024
NA
J4_5KPS_0101/28/1772:1776,
1/28/1788:1792,
1/28/1827:1830,
1/28/1975:1979
No text annotation
homologous
J4_9DFE_007
J4_61477.6
J4_5KPS_0111/28/1833:1835,
1/28/1905:1906,
1/28/1924:1933,
1/28/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_5KPS_0121/28/2285:2289,
1/28/2343:2347,
1/28/2370:2372,
1/28/2381:2383
No text annotation
homologous
J4_5J7L_027
NA
J4_5KPS_0131/28/2643:2646,
1/28/2674:2676,
1/28/2731:2735,
1/28/2769:2771
No text annotation
homologous
J4_5J7L_028
NA
J4_5KPS_0141/31/7:10,
1/31/25:27,
1/31/43:49,
1/31/65:66
tRNA junction
homologous
J4_6UFM_001
NA
J5_5KPS_0011/27/36:39,
1/27/403:406,
1/27/436:440,
1/27/497:500,
1/27/545:548
No text annotation
homologous
J5_5J7L_001
NA
J5_5KPS_0021/27/36:39,
1/27/403:406,
1/27/436:442,
1/27/492:500,
1/27/545:548
No text annotation
homologous
J5_5J7L_002
NA
J5_5KPS_0031/27/58:61,
1/27/106:113,
1/27/314:316,
1/27/337:339,
1/27/350:354
No text annotation
homologous
J5_5J7L_003
NA
J5_5KPS_0041/28/47:54,
1/28/116:121,
1/28/130:131,
1/28/148:150,
1/28/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_5KPS_0051/28/531:533,
1/28/560:564,
1/28/577:579,
1/28/1261:1262,
1/28/2017:2018
No text annotation
homologous
J5_5J7L_014
NA
J5_5KPS_0061/28/584:589,
1/28/668:671,
1/28/809:812,
1/28/1195:1196,
1/28/1250:1256
No text annotation
homologous
J5_5J7L_015
NA
J5_5KPS_0071/28/1674:1682,
1/28/1706:1707,
1/28/1751:1752,
1/28/1756:1764,
1/28/1988:1990
No text annotation
homologous
J5_5J7L_016
NA
J5_5KPS_0081/28/2057:2064,
1/28/2446:2453,
1/28/2500:2507,
1/28/2582:2588,
1/28/2606:2611
No text annotation
J5_5KPS_0091/28/2074:2077,
1/28/2243:2246,
1/28/2258:2259,
1/28/2281:2282,
1/28/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_5KPS_0011/28/45:46,
1/28/179:183,
1/28/214:224,
1/28/231:235,
1/28/262:266,
1/28/426:433
No text annotation
J6_5KPS_0021/28/2074:2077,
1/28/2243:2246,
1/28/2258:2259,
1/28/2281:2284,
1/28/2384:2395,
1/28/2421:2435
No text annotation
J7_5KPS_0011/28/8:15,
1/28/525:531,
1/28/2018:2023,
1/28/2040:2043,
1/28/2625:2630,
1/28/2788:2789,
1/28/2894:2895
No text annotation
J7_5KPS_0021/28/817:822,
1/28/835:837,
1/28/942:946,
1/28/971:976,
1/28/987:991,
1/28/1163:1164,
1/28/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_5KPS_031No text annotation
J3_5KPS_009No text annotation
J3_5KPS_011No text annotation
J3_5KPS_018No text annotation
J3_5KPS_025No text annotation
J4_5KPS_005No text annotation
J4_5KPS_015tRNA junction

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