HL_5KPS_009

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5KPS|1|27|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.3289

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

5KPS|1|27|C|342
5KPS|1|27|U|343
5KPS|1|27|A|344
5KPS|1|27|C|345
5KPS|1|27|G|346
5KPS|1|27|G|347

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19