HL_5KPS_013

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_013 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2215

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5KPS|1|27|C|522
5KPS|1|27|A|523
5KPS|1|27|G|524
5KPS|1|27|C|525
5KPS|1|27|C|526
5KPS|1|27|G|527

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 30

mRNA