HL_5KPS_026

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2286

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

5KPS|1|27|G|1134
5KPS|1|27|U|1135
5KPS|1|27|C|1136
5KPS|1|27|C|1137
5KPS|1|27|G|1138
5KPS|1|27|G|1139
5KPS|1|27|C|1140

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 14

30S ribosomal protein S9