HL_5KPS_027

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

5KPS|1|27|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2367

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5KPS|1|27|U|1165
5KPS|1|27|G|1166
5KPS|1|27|A|1167
5KPS|1|27|U|1168
5KPS|1|27|A|1169
5KPS|1|27|A|1170
5KPS|1|27|A|1171

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 26

30S ribosomal protein S21

Chain 7

30S ribosomal protein S2