HL_5KPS_041

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5KPS|1|28|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_041 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1003

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5KPS|1|28|C|305
5KPS|1|28|U|306
5KPS|1|28|G|307
5KPS|1|28|G|308
5KPS|1|28|A|309
5KPS|1|28|A|310
5KPS|1|28|A|311
5KPS|1|28|G|312

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24