HL_5KPS_044

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5KPS|1|28|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_044 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1065

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPS|1|28|G|410
5KPS|1|28|G|411
5KPS|1|28|A|412
5KPS|1|28|C|413
5KPS|1|28|C|414
5KPS|1|28|A|415
5KPS|1|28|U|416
5KPS|1|28|C|417

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15