HL_5KPS_048
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 5KPS|1|28|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPS_048 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1339
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5KPS|1|28|U|566
5KPS|1|28|U|567
5KPS|1|28|U|568
5KPS|1|28|U|569
5KPS|1|28|G|570
5KPS|1|28|U|571
5KPS|1|28|A|572
5KPS|1|28|U|573
5KPS|1|28|A|574
5KPS|1|28|A|575
Current chains
- Chain 28
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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