HL_5KPS_051

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5KPS|1|28|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_051 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.1412

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPS|1|28|U|641
5KPS|1|28|U|642
5KPS|1|28|A|643
5KPS|1|28|A|644
5KPS|1|28|C|645
5KPS|1|28|U|646
5KPS|1|28|G|647

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L33

Chain 5

50S ribosomal protein L35