HL_5KPS_052

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_052 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1204

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPS|1|28|G|712
5KPS|1|28|G|713
5KPS|1|28|U|714
5KPS|1|28|A|715
5KPS|1|28|A|716
5KPS|1|28|C|717
5KPS|1|28|A|718
5KPS|1|28|C|719

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S15

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2