3D structure

PDB id
5KPS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
5KPS|1|28|A|781, 5KPS|1|28|G|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5KPS_054 not in the Motif Atlas
Geometric match to HL_2NUE_001
Geometric discrepancy: 0.359
The information below is about HL_2NUE_001
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_53890.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
15

Unit IDs

5KPS|1|28|U|779
5KPS|1|28|G|780
5KPS|1|28|A|781
5KPS|1|28|A|782
5KPS|1|28|A|783
5KPS|1|28|G|784
5KPS|1|28|G|785

Current chains

Chain 28
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.695 s