HL_5KPS_059

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5KPS|1|28|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_059 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2757

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|C|1064
5KPS|1|28|U|1065
5KPS|1|28|U|1066
5KPS|1|28|A|1067
5KPS|1|28|G|1068
5KPS|1|28|A|1069
5KPS|1|28|A|1070
5KPS|1|28|G|1071
5KPS|1|28|C|1072
5KPS|1|28|A|1073
5KPS|1|28|G|1074

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain A

GTP pyrophosphokinase

Chain I

50S ribosomal protein L11