HL_5KPS_071

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5KPS|1|28|A|1614, 5KPS|1|28|A|1616, 5KPS|1|28|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_071 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1107

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5KPS|1|28|C|1612
5KPS|1|28|G|1613
5KPS|1|28|A|1614
5KPS|1|28|C|1615
5KPS|1|28|A|1616
5KPS|1|28|C|1617
5KPS|1|28|A|1618
5KPS|1|28|G|1619

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain S

50S ribosomal protein L22