HL_5KPS_080

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5KPS|1|28|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_080 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0864

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5KPS|1|28|G|1949
5KPS|1|28|G|1950
5KPS|1|28|U|1951
5KPS|1|28|A|1952
5KPS|1|28|A|1953
5KPS|1|28|G|1954
5KPS|1|28|U|1955
5KPS|1|28|U|1956
5KPS|1|28|C|1957

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L14