HL_5KPS_082

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

5KPS|1|28|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_082 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.2563

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

5KPS|1|28|A|2142
5KPS|1|28|C|2143
5KPS|1|28|G|2144
5KPS|1|28|C|2145
5KPS|1|28|C|2146
5KPS|1|28|A|2147
5KPS|1|28|G|2148
5KPS|1|28|U|2149

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S11