HL_5KPS_084

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5KPS|1|28|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_084 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1165

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|C|2248
5KPS|1|28|U|2249
5KPS|1|28|G|2250
5KPS|1|28|G|2251
5KPS|1|28|G|2252
5KPS|1|28|G|2253
5KPS|1|28|C|2254
5KPS|1|28|G|2255
5KPS|1|28|G|2256

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 31

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27