HL_5KPS_097

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5KPS|1|28|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_097 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1017

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5KPS|1|28|C|2745
5KPS|1|28|U|2746
5KPS|1|28|G|2747
5KPS|1|28|A|2748
5KPS|1|28|A|2749
5KPS|1|28|A|2750
5KPS|1|28|G|2751
5KPS|1|28|C|2752
5KPS|1|28|A|2753
5KPS|1|28|U|2754
5KPS|1|28|C|2755
5KPS|1|28|U|2756
5KPS|1|28|A|2757
5KPS|1|28|A|2758
5KPS|1|28|G|2759

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13