HL_5KPS_109

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

5KPS|1|28|A|1453, 5KPS|1|28|C|1454, 5KPS|1|28|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_109 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3028

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|28|G|1450
5KPS|1|28|C|1451
5KPS|1|28|G|1452
5KPS|1|28|A|1453
5KPS|1|28|C|1454
5KPS|1|28|G|1455
5KPS|1|28|G|1456
5KPS|1|28|U|1457
5KPS|1|28|U|1458
5KPS|1|28|G|1459
5KPS|1|28|U|1460
5KPS|1|28|C|1461

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17