HL_5KPV_003

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.2029

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5KPV|1|26|G|158
5KPV|1|26|G|159
5KPV|1|26|A|160
5KPV|1|26|A|161
5KPV|1|26|A|162
5KPV|1|26|C|163

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20

Chain O

50S ribosomal protein L19