HL_5KPV_005

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5KPV|1|26|U|209

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_005 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5555

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

5KPV|1|26|C|206
5KPV|1|26|C|207
5KPV|1|26|U|208
5KPV|1|26|U|209
5KPV|1|26|C|210
5KPV|1|26|G|211
5KPV|1|26|G|212
5KPV|1|26|G|213

Current chains

Chain 26

16S ribosomal RNA

Nearby chains