HL_5KPV_042

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5KPV|1|27|G|329, 5KPV|1|27|A|330, 5KPV|1|27|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_042 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.136

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5KPV|1|27|G|327
5KPV|1|27|U|328
5KPV|1|27|G|329
5KPV|1|27|A|330
5KPV|1|27|C|331
5KPV|1|27|A|332
5KPV|1|27|G|333
5KPV|1|27|C|334
5KPV|1|27|C|335

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain T

50S ribosomal protein L24