HL_5KPV_056

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_056 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.2912

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPV|1|27|C|885
5KPV|1|27|A|886
5KPV|1|27|U|887
5KPV|1|27|C|888
5KPV|1|27|C|889
5KPV|1|27|C|890
5KPV|1|27|G|891

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13

Chain 33

GTP pyrophosphokinase