HL_5KPV_058

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_058 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2827

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5KPV|1|27|G|978
5KPV|1|27|A|979
5KPV|1|27|A|980
5KPV|1|27|A|981
5KPV|1|27|C|982
5KPV|1|27|A|983
5KPV|1|27|A|984
5KPV|1|27|C|985

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21