HL_5KPV_104
3D structure
- PDB id
- 5KPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPV_104 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3258
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5KPV|1|30|G|30
5KPV|1|30|A|31
5KPV|1|30|U|32
5KPV|1|30|U|33
5KPV|1|30|G|34
5KPV|1|30|A|35
5KPV|1|30|A|36
5KPV|1|30|A|37
5KPV|1|30|A|38
5KPV|1|30|U|39
5KPV|1|30|C|40
Current chains
- Chain 30
- A-site tRNAPhe
Nearby chains
- Chain 26
- Small subunit ribosomal RNA; SSU rRNA
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain 29
- mRNA
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