HL_5KPV_116

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGCAGCCUGGUAGCU

Length

15 nucleotides

Bulged bases

5KPV|1|32|G|18, 5KPV|1|32|G|19, 5KPV|1|32|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_116 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.3579

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPV|1|32|A|11
5KPV|1|32|G|12
5KPV|1|32|C|13
5KPV|1|32|A|14
5KPV|1|32|G|15
5KPV|1|32|C|16
5KPV|1|32|C|17
5KPV|1|32|U|17|||A
5KPV|1|32|G|18
5KPV|1|32|G|19
5KPV|1|32|U|20
5KPV|1|32|A|21
5KPV|1|32|G|22
5KPV|1|32|C|23
5KPV|1|32|U|24

Current chains

Chain 32

E-site tRNAfMet

Nearby chains

Chain 27

Large subunit ribosomal RNA; LSU rRNA