HL_5KPW_006

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5KPW|1|26|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1509

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KPW|1|26|G|259
5KPW|1|26|G|260
5KPW|1|26|U|261
5KPW|1|26|A|262
5KPW|1|26|A|263
5KPW|1|26|C|264
5KPW|1|26|G|265
5KPW|1|26|G|266
5KPW|1|26|C|267

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 21

30S ribosomal protein S17

Chain 24

30S ribosomal protein S20