HL_5KPW_046

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_046 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3807

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

5KPW|1|27|C|544
5KPW|1|27|U|545
5KPW|1|27|U|546
5KPW|1|27|A|547
5KPW|1|27|G|548
5KPW|1|27|G|549

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13

Chain Q

50S ribosomal protein L21