HL_5KPW_054

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5KPW|1|27|U|827, 5KPW|1|27|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_054 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.1574

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5KPW|1|27|U|826
5KPW|1|27|U|827
5KPW|1|27|U|828
5KPW|1|27|A|829
5KPW|1|27|G|830
5KPW|1|27|G|831

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15