HL_5KPW_056

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

5KPW|1|27|U|958, 5KPW|1|27|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_056 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2513

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|G|954
5KPW|1|27|U|955
5KPW|1|27|G|956
5KPW|1|27|C|957
5KPW|1|27|U|958
5KPW|1|27|A|959
5KPW|1|27|A|960
5KPW|1|27|C|961
5KPW|1|27|G|962
5KPW|1|27|U|963

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 28

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16