HL_5KPW_073

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5KPW|1|27|U|1729, 5KPW|1|27|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_073 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3847

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPW|1|27|C|1727
5KPW|1|27|C|1728
5KPW|1|27|U|1729
5KPW|1|27|C|1730
5KPW|1|27|G|1731
5KPW|1|27|C|1732
5KPW|1|27|G|1733

Current chains

Chain 27

23S ribosomal RNA

Nearby chains