HL_6VMY_004

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCAAGCG

Length

7 nucleotides

Bulged bases (A, C, G, U)

289A, 292C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91058.1

Basepair signature

cWW-cWH

Number of instances in this motif group

6

Unit IDs

6VMY|1|A|C|287
6VMY|1|A|C|288
6VMY|1|A|A|289
6VMY|1|A|A|290
6VMY|1|A|G|291
6VMY|1|A|C|292
6VMY|1|A|G|293

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains