HL_5KPW_086

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_086 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.109

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5KPW|1|27|U|2324
5KPW|1|27|G|2325
5KPW|1|27|C|2326
5KPW|1|27|A|2327
5KPW|1|27|A|2328
5KPW|1|27|U|2329
5KPW|1|27|G|2330
5KPW|1|27|G|2331

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 31

Transfer RNA; tRNA

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27