HL_5KPW_104
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPW_104 not in the Motif Atlas
- Homologous match to HL_4V90_034
- Geometric discrepancy: 0.5548
- The information below is about HL_4V90_034
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5KPW|1|30|G|53
5KPW|1|30|U|54
5KPW|1|30|U|55
5KPW|1|30|C|56
5KPW|1|30|G|57
5KPW|1|30|A|58
5KPW|1|30|U|59
5KPW|1|30|U|60
5KPW|1|30|C|61
Current chains
- Chain 30
- A-site tRNAPhe
Nearby chains
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L11
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