HL_5KPW_109
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPW_109 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.4186
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5KPW|1|32|G|31
5KPW|1|32|C|32
5KPW|1|32|U|33
5KPW|1|32|C|34
5KPW|1|32|A|35
5KPW|1|32|U|36
5KPW|1|32|A|37
5KPW|1|32|A|38
5KPW|1|32|C|39
Current chains
- Chain 32
- E-site tRNAfMet
Nearby chains
- Chain 11
- 30S ribosomal protein S7
- Chain 15
- 30S ribosomal protein S11
- Chain 26
- Small subunit ribosomal RNA; SSU rRNA
- Chain 29
- mRNA
- Chain 31
- Transfer RNA; tRNA
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