HL_5KPX_015
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPX_015 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.1095
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5KPX|1|26|C|689
5KPX|1|26|G|690
5KPX|1|26|G|691
5KPX|1|26|U|692
5KPX|1|26|G|693
5KPX|1|26|A|694
5KPX|1|26|A|695
5KPX|1|26|A|696
5KPX|1|26|U|697
5KPX|1|26|G|698
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 11
- 30S ribosomal protein S7
- Chain 15
- 30S ribosomal protein S11
- Chain 25
- 30S ribosomal protein S21
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain 29
- mRNA
- Chain 32
- Transfer RNA; tRNA
Coloring options: