HL_5KPX_018

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5KPX|1|26|U|842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3937

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5KPX|1|26|C|840
5KPX|1|26|C|841
5KPX|1|26|U|842
5KPX|1|26|U|843
5KPX|1|26|G|844
5KPX|1|26|A|845
5KPX|1|26|G|846

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S18

Chain 6

30S ribosomal protein S2