HL_5KPX_055

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_055 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3176

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPX|1|27|C|885
5KPX|1|27|A|886
5KPX|1|27|U|887
5KPX|1|27|C|888
5KPX|1|27|C|889
5KPX|1|27|C|890
5KPX|1|27|G|891

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13

Chain 33

GTP pyrophosphokinase