HL_5KPX_056

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

5KPX|1|27|U|958, 5KPX|1|27|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_056 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2662

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPX|1|27|G|954
5KPX|1|27|U|955
5KPX|1|27|G|956
5KPX|1|27|C|957
5KPX|1|27|U|958
5KPX|1|27|A|959
5KPX|1|27|A|960
5KPX|1|27|C|961
5KPX|1|27|G|962
5KPX|1|27|U|963

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 28

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16