HL_5KPX_059
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPX_059 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.2415
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5KPX|1|27|C|1092
5KPX|1|27|G|1093
5KPX|1|27|U|1094
5KPX|1|27|A|1095
5KPX|1|27|A|1096
5KPX|1|27|U|1097
5KPX|1|27|A|1098
5KPX|1|27|G|1099
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 30
- Transfer RNA; tRNA
- Chain E
- 50S ribosomal protein L6
- Chain G
- 50S ribosomal protein L10
- Chain H
- 50S ribosomal protein L11
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