HL_5KPX_066

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

5KPX|1|27|A|1453, 5KPX|1|27|C|1454, 5KPX|1|27|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_066 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.3291

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPX|1|27|G|1450
5KPX|1|27|C|1451
5KPX|1|27|G|1452
5KPX|1|27|A|1453
5KPX|1|27|C|1454
5KPX|1|27|G|1455
5KPX|1|27|G|1456
5KPX|1|27|U|1457
5KPX|1|27|U|1458
5KPX|1|27|G|1459
5KPX|1|27|U|1460
5KPX|1|27|C|1461

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17