HL_5KPX_115
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCAGCCUGGUAGCU
- Length
- 15 nucleotides
- Bulged bases
- 5KPX|1|32|C|16, 5KPX|1|32|G|18, 5KPX|1|32|G|19, 5KPX|1|32|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPX_115 not in the Motif Atlas
- Homologous match to HL_4V9I_038
- Geometric discrepancy: 0.5239
- The information below is about HL_4V9I_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68572.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5KPX|1|32|A|11
5KPX|1|32|G|12
5KPX|1|32|C|13
5KPX|1|32|A|14
5KPX|1|32|G|15
5KPX|1|32|C|16
5KPX|1|32|C|17
5KPX|1|32|U|17|||A
5KPX|1|32|G|18
5KPX|1|32|G|19
5KPX|1|32|U|20
5KPX|1|32|A|21
5KPX|1|32|G|22
5KPX|1|32|C|23
5KPX|1|32|U|24
Current chains
- Chain 32
- E-site tRNAfMet
Nearby chains
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
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